Genome browser: Difference between revisions
Sam Prudence (talk | contribs) No edit summary |
Sam Prudence (talk | contribs) No edit summary |
||
| Line 1: | Line 1: | ||
<h2><strong>ActinoBase Genome Browser</strong></h2> | <h2><strong>ActinoBase Genome Browser</strong></h2> | ||
Click the link below for the ActinoBase MORF Genome Browser, with antiSMASH integration. This tool has been kindly provided to ActinoBase by | Click the link below for the ActinoBase MORF Genome Browser, with antiSMASH integration. This tool has been kindly provided to ActinoBase by [Prof. Gavin Thomas http://thomaslabyork.weebly.com/gavin.html] and [Dr. Victoria Springthorpe https://www.york.ac.uk/biology/itsupport/cfm/post_doc/profile.cfm?ID=1617] at the University of York. | ||
Currently we have the genomes for the following actinomycetes listed. If you have an actinomycete genome you would like to see listed, please don't hesitate to Contact us ([[Admin contact page]]) and ask! | Currently we have the genomes for the following actinomycetes listed. If you have an actinomycete genome you would like to see listed, please don't hesitate to Contact us ([[Admin contact page]]) and ask! | ||
Revision as of 15:38, 20 February 2020
ActinoBase Genome Browser
Click the link below for the ActinoBase MORF Genome Browser, with antiSMASH integration. This tool has been kindly provided to ActinoBase by [Prof. Gavin Thomas http://thomaslabyork.weebly.com/gavin.html] and [Dr. Victoria Springthorpe https://www.york.ac.uk/biology/itsupport/cfm/post_doc/profile.cfm?ID=1617] at the University of York.
Currently we have the genomes for the following actinomycetes listed. If you have an actinomycete genome you would like to see listed, please don't hesitate to Contact us (Admin contact page) and ask!
- Propionibacterium freudenreichii subsp. freudenreichii
- Pseudonocardia autotrophica
- Salinispora arenicola CNS-205
- Streptomyces avermitilis MA-4680 = NBRC 14893
- Streptomyces clavuligerus
- Streptomyces coelicolor A3(2)
- Streptomyces formicae
- Streptomyces griseus subsp. griseus NBRC 13350
- Streptomyces rimosus
- Streptomyces scabiei 87.22
- Streptomyces venezuelae
Using the browser you can see the location of every single gene along the genome, along with useful statistics such as the genome size and number of plasmids (if any). You can also browse the antiSMASH output the genome, and see which genes are contained within the putative biosynthetic gene clusters. Please feel free to Contact us (Admin contact page) with any feedback or feature suggestions! [MORF Genome Browser https://detoxbase.org/projects/Microbiology/ActinoBase]
