Protein & peptide analysis: Difference between revisions
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(Created page with "Useful resources for analysing protein and peptide features, structures and families: <strong>STRING</strong>: https://string-db.org/ <strong>pFam</strong>: https://pfam.xfa...") |
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<strong>STRING</strong>: https://string-db.org/ | <strong>STRING</strong>: https://string-db.org/ | ||
*Protein-Protein Interaction Networks | |||
<strong>pFam</strong>: https://pfam.xfam.org/ | <strong>pFam</strong>: https://pfam.xfam.org/ | ||
*Database of protein families | |||
<strong>Phobius</strong>: http://phobius.cbr.su.se/ | <strong>Phobius</strong>: http://phobius.cbr.su.se/ | ||
*Combined transmembrane topology and signal peptide predictor | |||
<strong>SignalP</strong>: http://www.cbs.dtu.dk/services/SignalP/ | <strong>SignalP</strong>: http://www.cbs.dtu.dk/services/SignalP/ | ||
*Signal peptide predictor | |||
<strong>PDB</strong>: https://www.rcsb.org/ | <strong>PDB</strong>: https://www.rcsb.org/ | ||
*Protein data bank | |||
<strong>Phyre2</strong>: http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index | <strong>Phyre2</strong>: http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index | ||
*Protein fold recognition | |||
<strong>ExPASy</strong>: https:// | <strong>ExPASy</strong>: https://expasy.org/proteomics | ||
*Collection of proteomics resources | |||
<strong>MEME suite</strong>: http://meme-suite.org/tools/meme | <strong>MEME suite</strong>: http://meme-suite.org/tools/meme | ||
*Motif-based sequence analysis | |||
Latest revision as of 21:30, 8 June 2019
Useful resources for analysing protein and peptide features, structures and families:
STRING: https://string-db.org/
- Protein-Protein Interaction Networks
pFam: https://pfam.xfam.org/
- Database of protein families
Phobius: http://phobius.cbr.su.se/
- Combined transmembrane topology and signal peptide predictor
SignalP: http://www.cbs.dtu.dk/services/SignalP/
- Signal peptide predictor
- Protein data bank
Phyre2: http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index
- Protein fold recognition
ExPASy: https://expasy.org/proteomics
- Collection of proteomics resources
MEME suite: http://meme-suite.org/tools/meme
- Motif-based sequence analysis
