Protein & peptide analysis

From ActinoBase

Useful resources for analysing protein and peptide features, structures and families:

STRING: https://string-db.org/

  • Protein-Protein Interaction Networks

pFam: https://pfam.xfam.org/

  • Database of protein families

Phobius: http://phobius.cbr.su.se/

  • Combined transmembrane topology and signal peptide predictor

SignalP: http://www.cbs.dtu.dk/services/SignalP/

  • Signal peptide predictor

PDB: https://www.rcsb.org/

  • Protein data bank

Phyre2: http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index

  • Protein fold recognition

ExPASy: https://expasy.org/proteomics

  • Collection of proteomics resources

MEME suite: http://meme-suite.org/tools/meme

  • Motif-based sequence analysis